HL_3JBO_114
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- AUCCCAUCAGAACU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JBO_114 not in the Motif Atlas
- Homologous match to HL_4V9F_074
- Geometric discrepancy: 0.1771
- The information below is about HL_4V9F_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.2
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
3JBO|1|AB|A|32
3JBO|1|AB|U|33
3JBO|1|AB|C|34
3JBO|1|AB|C|35
3JBO|1|AB|C|36
3JBO|1|AB|A|37
3JBO|1|AB|U|38
3JBO|1|AB|C|39
3JBO|1|AB|A|40
3JBO|1|AB|G|41
3JBO|1|AB|A|42
3JBO|1|AB|A|43
3JBO|1|AB|C|44
3JBO|1|AB|U|45
Current chains
- Chain AB
- 5S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AG
- 60S ribosomal protein uL5
- Chain AR
- 60S ribosomal protein uL18
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