HL_3JBP_047
3D structure
- PDB id
- 3JBP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.7 Å
Loop
- Sequence
- UUUGAGAUUG
- Length
- 10 nucleotides
- Bulged bases
- 3JBP|1|AA|A|291
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JBP_047 not in the Motif Atlas
- Homologous match to HL_8P9A_120
- Geometric discrepancy: 0.3512
- The information below is about HL_8P9A_120
- Detailed Annotation
- T-loop related
- Broad Annotation
- T-loop
- Motif group
- HL_63894.2
- Basepair signature
- cWW-cWW-F-F-F
- Number of instances in this motif group
- 19
Unit IDs
3JBP|1|AA|U|285
3JBP|1|AA|U|286
3JBP|1|AA|U|287
3JBP|1|AA|G|288
3JBP|1|AA|A|289
3JBP|1|AA|G|290
3JBP|1|AA|A|291
3JBP|1|AA|U|292
3JBP|1|AA|U|293
3JBP|1|AA|G|294
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AL
- 60S ribosomal protein eL13
- Chain AO
- 60S ribosomal protein uL15
- Chain AP
- 60S ribosomal protein eL15
- Chain Ai
- 60S ribosomal protein eL44
Coloring options: