HL_3JBP_052

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

AUUGUU

Length

6 nucleotides

Bulged bases

3JBP|1|AA|U|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBP_052 not in the Motif Atlas

Geometric match to HL_4LX6_002

Geometric discrepancy: 0.3591

The information below is about HL_4LX6_002

Detailed Annotation

Purine riboswitch

Broad Annotation

Purine riboswitch

Motif group

HL_46333.1

Basepair signature

cWW-R-cSH

Number of instances in this motif group

11

Unit IDs

3JBP|1|AA|A|552
3JBP|1|AA|U|572
3JBP|1|AA|U|573
3JBP|1|AA|G|574
3JBP|1|AA|U|575
3JBP|1|AA|U|576

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AF

60S ribosomal protein uL4

Chain AU

60S ribosomal protein eL20

Chain AV

60S ribosomal protein eL21