HL_3JBP_055

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

3JBP|1|AA|C|726

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBP_055 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.1185

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

3JBP|1|AA|U|718
3JBP|1|AA|C|719
3JBP|1|AA|U|720
3JBP|1|AA|U|721
3JBP|1|AA|G|722
3JBP|1|AA|A|723
3JBP|1|AA|A|724
3JBP|1|AA|A|725
3JBP|1|AA|C|726
3JBP|1|AA|A|727

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A8

60S ribosomal protein eL32

Chain AE

60S ribosomal protein uL3

Chain AO

60S ribosomal protein uL15