HL_3JBP_079

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

AAAAUU

Length

6 nucleotides

Bulged bases

3JBP|1|AA|A|1915

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBP_079 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.398

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

3JBP|1|AA|A|1912
3JBP|1|AA|A|1913
3JBP|1|AA|A|1914
3JBP|1|AA|A|1915
3JBP|1|AA|U|1956
3JBP|1|AA|U|1957

Current chains

Chain AA

28S ribosomal RNA

Nearby chains