HL_3JBP_084

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

3JBP|1|AA|U|2193

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBP_084 not in the Motif Atlas

Geometric match to HL_7RQB_042

Geometric discrepancy: 0.1034

The information below is about HL_7RQB_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03562.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

56

Unit IDs

3JBP|1|AA|C|2191
3JBP|1|AA|U|2192
3JBP|1|AA|U|2193
3JBP|1|AA|C|2194
3JBP|1|AA|G|2195
3JBP|1|AA|G|2196

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain Ag

60S ribosomal protein eL41

Chain Ah

60S ribosomal protein eL43