HL_3JBU_002

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

AAGCUUGCUU

Length

10 nucleotides

Bulged bases

3JBU|1|A|U|84

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBU_002 not in the Motif Atlas

Geometric match to HL_6D12_002

Geometric discrepancy: 0.2826

The information below is about HL_6D12_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.6

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

3JBU|1|A|A|80
3JBU|1|A|A|81
3JBU|1|A|G|82
3JBU|1|A|C|83
3JBU|1|A|U|84
3JBU|1|A|U|85
3JBU|1|A|G|86
3JBU|1|A|C|87
3JBU|1|A|U|88
3JBU|1|A|U|89

Current chains

Chain A

16S rRNA

Nearby chains