HL_3JBU_030

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

3JBU|1|A|U|1451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBU_030 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3796

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86870.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

3JBU|1|A|C|1448
3JBU|1|A|C|1449
3JBU|1|A|U|1450
3JBU|1|A|U|1451
3JBU|1|A|C|1452
3JBU|1|A|G|1453
3JBU|1|A|G|1454
3JBU|1|A|G|1455

Current chains

Chain A

16S rRNA

Nearby chains