HL_3JBU_039

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

3JBU|1|b|A|196, 3JBU|1|b|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBU_039 not in the Motif Atlas

Homologous match to HL_4WF9_006

Geometric discrepancy: 0.2076

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

3JBU|1|b|G|194
3JBU|1|b|A|195
3JBU|1|b|A|196
3JBU|1|b|A|197
3JBU|1|b|C|198
3JBU|1|b|A|199
3JBU|1|b|U|200
3JBU|1|b|C|201

Current chains

Chain b

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L28

Chain l

50S ribosomal protein L15