HL_3JBU_044

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

3JBU|1|b|G|329, 3JBU|1|b|A|330, 3JBU|1|b|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBU_044 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.2673

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

3JBU|1|b|G|327
3JBU|1|b|U|328
3JBU|1|b|G|329
3JBU|1|b|A|330
3JBU|1|b|C|331
3JBU|1|b|A|332
3JBU|1|b|G|333
3JBU|1|b|C|334
3JBU|1|b|C|335

Current chains

Chain b

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain u

50S ribosomal protein L24