HL_3JBU_048

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

3JBU|1|b|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBU_048 not in the Motif Atlas

Homologous match to HL_5J7L_148

Geometric discrepancy: 0.2251

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

3JBU|1|b|C|487
3JBU|1|b|G|488
3JBU|1|b|G|489
3JBU|1|b|C|490
3JBU|1|b|G|491
3JBU|1|b|A|492
3JBU|1|b|G|493

Current chains

Chain b

23S rRNA

Nearby chains

Chain s

50S ribosomal protein L22

Chain z

SecM-glycine