HL_3JBU_062

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

3JBU|1|b|A|1095, 3JBU|1|b|A|1096, 3JBU|1|b|U|1097, 3JBU|1|b|A|1098

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBU_062 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.227

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

3JBU|1|b|C|1092
3JBU|1|b|G|1093
3JBU|1|b|U|1094
3JBU|1|b|A|1095
3JBU|1|b|A|1096
3JBU|1|b|U|1097
3JBU|1|b|A|1098
3JBU|1|b|G|1099

Current chains

Chain b

23S rRNA

Nearby chains

Chain g

50S ribosomal protein L6