HL_3JBU_065
3D structure
- PDB id
- 3JBU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.64 Å
Loop
- Sequence
- GUGAAAAGC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JBU_065 not in the Motif Atlas
- Homologous match to HL_5J7L_165
- Geometric discrepancy: 0.1967
- The information below is about HL_5J7L_165
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
3JBU|1|b|G|1281
3JBU|1|b|U|1282
3JBU|1|b|G|1283
3JBU|1|b|A|1284
3JBU|1|b|A|1285
3JBU|1|b|A|1286
3JBU|1|b|A|1287
3JBU|1|b|G|1288
3JBU|1|b|C|1289
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L32
- Chain n
- 50S ribosomal protein L17
- Chain s
- 50S ribosomal protein L22
Coloring options: