HL_3JBU_066

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

3JBU|1|b|U|1325, 3JBU|1|b|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBU_066 not in the Motif Atlas

Homologous match to HL_7A0S_033

Geometric discrepancy: 0.2813

The information below is about HL_7A0S_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

3JBU|1|b|G|1324
3JBU|1|b|U|1325
3JBU|1|b|U|1326
3JBU|1|b|A|1327
3JBU|1|b|A|1328
3JBU|1|b|U|1329
3JBU|1|b|C|1330

Current chains

Chain b

23S rRNA

Nearby chains

Chain n

50S ribosomal protein L17

Chain s

50S ribosomal protein L22

Chain z

SecM-glycine