HL_3JBU_081

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

3JBU|1|b|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBU_081 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.2646

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

3JBU|1|b|G|1910
3JBU|1|b|U|1911
3JBU|1|b|A|1912
3JBU|1|b|A|1913
3JBU|1|b|C|1914
3JBU|1|b|U|1915
3JBU|1|b|A|1916
3JBU|1|b|U|1917
3JBU|1|b|A|1918
3JBU|1|b|A|1919
3JBU|1|b|C|1920

Current chains

Chain b

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain v

Transfer RNA; tRNA