HL_3JBU_091

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

3JBU|1|b|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBU_091 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.1655

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

3JBU|1|b|U|2404
3JBU|1|b|G|2405
3JBU|1|b|A|2406
3JBU|1|b|A|2407
3JBU|1|b|U|2408
3JBU|1|b|G|2409
3JBU|1|b|G|2410
3JBU|1|b|A|2411
3JBU|1|b|A|2412
3JBU|1|b|G|2413

Current chains

Chain b

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L15