HL_3JBU_098

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

3JBU|1|b|G|2751, 3JBU|1|b|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBU_098 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1683

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

3JBU|1|b|C|2745
3JBU|1|b|U|2746
3JBU|1|b|G|2747
3JBU|1|b|A|2748
3JBU|1|b|A|2749
3JBU|1|b|A|2750
3JBU|1|b|G|2751
3JBU|1|b|C|2752
3JBU|1|b|A|2753
3JBU|1|b|U|2754
3JBU|1|b|C|2755
3JBU|1|b|U|2756
3JBU|1|b|A|2757
3JBU|1|b|A|2758
3JBU|1|b|G|2759

Current chains

Chain b

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain g

50S ribosomal protein L6

Chain j

50S ribosomal protein L13