HL_3JBU_118

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GGGAAACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBU_118 not in the Motif Atlas

Geometric match to HL_2IL9_007

Geometric discrepancy: 0.2585

The information below is about HL_2IL9_007

Detailed Annotation

GNRA with near cWW

Broad Annotation

GNRA with near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

3JBU|1|b|G|628
3JBU|1|b|G|629
3JBU|1|b|G|630
3JBU|1|b|A|631
3JBU|1|b|A|632
3JBU|1|b|A|633
3JBU|1|b|C|634
3JBU|1|b|C|635

Current chains

Chain b

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain l

50S ribosomal protein L15