HL_3JBU_119

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GUGAAAGGC

Length

9 nucleotides

Bulged bases

3JBU|1|b|A|781, 3JBU|1|b|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBU_119 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.2997

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3JBU|1|b|G|778
3JBU|1|b|U|779
3JBU|1|b|G|780
3JBU|1|b|A|781
3JBU|1|b|A|782
3JBU|1|b|A|783
3JBU|1|b|G|784
3JBU|1|b|G|785
3JBU|1|b|C|786

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2