HL_3JBU_123

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GCUGUUCGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBU_123 not in the Motif Atlas

Geometric match to HL_6NTA_138

Geometric discrepancy: 0.3646

The information below is about HL_6NTA_138

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

46

Unit IDs

3JBU|1|b|G|2550
3JBU|1|b|C|2551
3JBU|1|b|U|2552
3JBU|1|b|G|2553
3JBU|1|b|U|2554
3JBU|1|b|U|2555
3JBU|1|b|C|2556
3JBU|1|b|G|2557
3JBU|1|b|C|2558

Current chains

Chain b

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L14