HL_3JBV_006

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

3JBV|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBV_006 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.1808

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

3JBV|1|A|G|259
3JBV|1|A|G|260
3JBV|1|A|U|261
3JBV|1|A|A|262
3JBV|1|A|A|263
3JBV|1|A|C|264
3JBV|1|A|G|265
3JBV|1|A|G|266
3JBV|1|A|C|267

Current chains

Chain A

RNA (1530-MER)

Nearby chains

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20