HL_3JBV_037

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

CAUGCCGUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72253.1

Basepair signature

cWW-bif-R-R-R-R-R

Number of instances in this motif group

42

Unit IDs

3JBV|1|W|C|31
3JBV|1|W|A|32
3JBV|1|W|U|33
3JBV|1|W|G|34
3JBV|1|W|C|35
3JBV|1|W|C|36
3JBV|1|W|G|37
3JBV|1|W|U|38
3JBV|1|W|G|39

Current chains

Chain W

RNA (75-MER)

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain I

30S ribosomal protein S9

Chain X

RNA (5'-R(P*CP*UP*GP*GP*CP*CP*CP*UP*CP*AP*A)-3')