HL_3JBV_045

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

3JBV|1|b|A|196, 3JBV|1|b|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBV_045 not in the Motif Atlas

Geometric match to HL_4WF9_006

Geometric discrepancy: 0.1716

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

3JBV|1|b|G|194
3JBV|1|b|A|195
3JBV|1|b|A|196
3JBV|1|b|A|197
3JBV|1|b|C|198
3JBV|1|b|A|199
3JBV|1|b|U|200
3JBV|1|b|C|201

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 0

50S ribosomal protein L28

Chain W

Transfer RNA; tRNA

Chain l

50S ribosomal protein L15