HL_3JBV_048

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

3JBV|1|b|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBV_048 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1971

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

21

Unit IDs

3JBV|1|b|C|305
3JBV|1|b|U|306
3JBV|1|b|G|307
3JBV|1|b|G|308
3JBV|1|b|A|309
3JBV|1|b|A|310
3JBV|1|b|A|311
3JBV|1|b|G|312

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain u

50S ribosomal protein L24