HL_3JBV_050

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

3JBV|1|b|G|329, 3JBV|1|b|A|330, 3JBV|1|b|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBV_050 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.2286

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

3JBV|1|b|G|327
3JBV|1|b|U|328
3JBV|1|b|G|329
3JBV|1|b|A|330
3JBV|1|b|C|331
3JBV|1|b|A|332
3JBV|1|b|G|333
3JBV|1|b|C|334
3JBV|1|b|C|335

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain e

50S ribosomal protein L3

Chain u

50S ribosomal protein L24