3D structure

PDB id
3JBV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps
Experimental method
ELECTRON MICROSCOPY
Resolution
3.32 Å

Loop

Sequence
GGAAAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3JBV_058 not in the Motif Atlas
Homologous match to HL_5J7L_152
Geometric discrepancy: 0.2058
The information below is about HL_5J7L_152
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

3JBV|1|b|G|629
3JBV|1|b|G|630
3JBV|1|b|A|631
3JBV|1|b|A|632
3JBV|1|b|A|633
3JBV|1|b|C|634

Current chains

Chain b
RNA (2903-MER)

Nearby chains

Chain 7
50S ribosomal protein L35
Chain l
50S ribosomal protein L15

Coloring options:


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