HL_3JBV_071

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBV_071 not in the Motif Atlas

Homologous match to HL_5J7L_165

Geometric discrepancy: 0.1679

The information below is about HL_5J7L_165

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

3JBV|1|b|G|1281
3JBV|1|b|U|1282
3JBV|1|b|G|1283
3JBV|1|b|A|1284
3JBV|1|b|A|1285
3JBV|1|b|A|1286
3JBV|1|b|A|1287
3JBV|1|b|G|1288
3JBV|1|b|C|1289

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 3

50S ribosomal protein L32

Chain n

50S ribosomal protein L17

Chain s

50S ribosomal protein L22