HL_3JBV_091

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GUAAUCC

Length

7 nucleotides

Bulged bases

3JBV|1|b|A|2211, 3JBV|1|b|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBV_091 not in the Motif Atlas

Homologous match to HL_5J7L_185

Geometric discrepancy: 0.4246

The information below is about HL_5J7L_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

3JBV|1|b|G|2209
3JBV|1|b|U|2210
3JBV|1|b|A|2211
3JBV|1|b|A|2212
3JBV|1|b|U|2213
3JBV|1|b|C|2214
3JBV|1|b|C|2215

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain c

50S ribosomal protein L2