HL_3JBV_096

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBV_096 not in the Motif Atlas

Homologous match to HL_5J7L_191

Geometric discrepancy: 0.1654

The information below is about HL_5J7L_191

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

3JBV|1|b|C|2374
3JBV|1|b|G|2375
3JBV|1|b|A|2376
3JBV|1|b|A|2377
3JBV|1|b|A|2378
3JBV|1|b|G|2379

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 4

50S ribosomal protein L33

Chain o

50S ribosomal protein L18