HL_3JBV_104

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

3JBV|1|b|G|2751, 3JBV|1|b|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBV_104 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1584

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

3JBV|1|b|C|2745
3JBV|1|b|U|2746
3JBV|1|b|G|2747
3JBV|1|b|A|2748
3JBV|1|b|A|2749
3JBV|1|b|A|2750
3JBV|1|b|G|2751
3JBV|1|b|C|2752
3JBV|1|b|A|2753
3JBV|1|b|U|2754
3JBV|1|b|C|2755
3JBV|1|b|U|2756
3JBV|1|b|A|2757
3JBV|1|b|A|2758
3JBV|1|b|G|2759

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 8

50S ribosomal protein L36

Chain g

50S ribosomal protein L5