HL_3JBV_109
3D structure
- PDB id
- 3JBV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.32 Å
Loop
- Sequence
- CUGAGAGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JBV_109 not in the Motif Atlas
- Geometric match to HL_2IL9_007
- Geometric discrepancy: 0.2301
- The information below is about HL_2IL9_007
- Detailed Annotation
- GNRA with extra near cWW
- Broad Annotation
- GNRA with extra near cWW
- Motif group
- HL_82182.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 21
Unit IDs
3JBV|1|A|C|295
3JBV|1|A|U|296
3JBV|1|A|G|297
3JBV|1|A|A|298
3JBV|1|A|G|299
3JBV|1|A|A|300
3JBV|1|A|G|301
3JBV|1|A|G|302
Current chains
- Chain A
- RNA (1530-MER)
Nearby chains
- Chain D
- 30S ribosomal protein S4
- Chain E
- 30S ribosomal protein S5
- Chain L
- 30S ribosomal protein S12
- Chain Q
- 30S ribosomal protein S17
Coloring options: