3D structure

PDB id
3JBV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps
Experimental method
ELECTRON MICROSCOPY
Resolution
3.32 Å

Loop

Sequence
CUGAGAGG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3JBV_109 not in the Motif Atlas
Geometric match to HL_2IL9_007
Geometric discrepancy: 0.2301
The information below is about HL_2IL9_007
Detailed Annotation
GNRA with extra near cWW
Broad Annotation
GNRA with extra near cWW
Motif group
HL_82182.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
21

Unit IDs

3JBV|1|A|C|295
3JBV|1|A|U|296
3JBV|1|A|G|297
3JBV|1|A|A|298
3JBV|1|A|G|299
3JBV|1|A|A|300
3JBV|1|A|G|301
3JBV|1|A|G|302

Current chains

Chain A
RNA (1530-MER)

Nearby chains

Chain D
30S ribosomal protein S4
Chain E
30S ribosomal protein S5
Chain L
30S ribosomal protein S12
Chain Q
30S ribosomal protein S17

Coloring options:


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