HL_3JBV_123

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GGCACUACGGUGCU

Length

14 nucleotides

Bulged bases

3JBV|1|b|A|1535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBV_123 not in the Motif Atlas

Geometric match to HL_6D12_002

Geometric discrepancy: 0.3026

The information below is about HL_6D12_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.6

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

3JBV|1|b|G|1529
3JBV|1|b|G|1530
3JBV|1|b|C|1531
3JBV|1|b|A|1532
3JBV|1|b|C|1533
3JBV|1|b|U|1534
3JBV|1|b|A|1535
3JBV|1|b|C|1536
3JBV|1|b|G|1537
3JBV|1|b|G|1538
3JBV|1|b|U|1539
3JBV|1|b|G|1540
3JBV|1|b|C|1541
3JBV|1|b|U|1542

Current chains

Chain b

RNA (2903-MER)

Nearby chains