HL_3JBV_124

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GGUAGAGAAUACC

Length

13 nucleotides

Bulged bases

3JBV|1|b|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBV_124 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3911

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

3JBV|1|b|G|1627
3JBV|1|b|G|1628
3JBV|1|b|U|1629
3JBV|1|b|A|1630
3JBV|1|b|G|1631
3JBV|1|b|A|1632
3JBV|1|b|G|1633
3JBV|1|b|A|1634
3JBV|1|b|A|1635
3JBV|1|b|U|1636
3JBV|1|b|A|1637
3JBV|1|b|C|1638
3JBV|1|b|C|1639

Current chains

Chain b

RNA (2903-MER)

Nearby chains