HL_3JBV_127

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GCUGUUCGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBV_127 not in the Motif Atlas

Geometric match to HL_8VTW_067

Geometric discrepancy: 0.3959

The information below is about HL_8VTW_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

3JBV|1|b|G|2550
3JBV|1|b|C|2551
3JBV|1|b|U|2552
3JBV|1|b|G|2553
3JBV|1|b|U|2554
3JBV|1|b|U|2555
3JBV|1|b|C|2556
3JBV|1|b|G|2557
3JBV|1|b|C|2558

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain k

50S ribosomal protein L14