HL_3JBV_131

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

3JBV|1|b|A|2309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBV_131 not in the Motif Atlas

Homologous match to HL_9DFE_198

Geometric discrepancy: 0.4689

The information below is about HL_9DFE_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

8

Unit IDs

3JBV|1|b|G|2304
3JBV|1|b|U|2305
3JBV|1|b|C|2306
3JBV|1|b|G|2307
3JBV|1|b|G|2308
3JBV|1|b|A|2309
3JBV|1|b|C|2310
3JBV|1|b|A|2311
3JBV|1|b|U|2312

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain V

Transfer RNA; tRNA

Chain f

50S ribosomal protein L4