HL_3JCD_047

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

3JCD|1|A|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCD_047 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.1629

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

3JCD|1|A|A|1630
3JCD|1|A|G|1631
3JCD|1|A|A|1632
3JCD|1|A|G|1633
3JCD|1|A|A|1634
3JCD|1|A|A|1635
3JCD|1|A|U|1636

Current chains

Chain A

23S ribosomal RNA

Nearby chains