HL_3JCE_006

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUCAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCE_006 not in the Motif Atlas

Geometric match to HL_4WT8_217

Geometric discrepancy: 0.1635

The information below is about HL_4WT8_217

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

3JCE|1|8|G|53
3JCE|1|8|U|54
3JCE|1|8|U|55
3JCE|1|8|C|56
3JCE|1|8|A|57
3JCE|1|8|A|58
3JCE|1|8|A|59
3JCE|1|8|U|60
3JCE|1|8|C|61

Current chains

Chain 8

tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain F

50S ribosomal protein L5

Chain M

50S ribosomal protein L16