HL_3JCE_007

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

3JCE|1|9|C|17, 3JCE|1|9|G|18

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCE_007 not in the Motif Atlas

Geometric match to HL_4V90_032

Geometric discrepancy: 0.3447

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

3JCE|1|9|C|13
3JCE|1|9|A|14
3JCE|1|9|G|15
3JCE|1|9|U|16
3JCE|1|9|C|17
3JCE|1|9|G|18
3JCE|1|9|G|19
3JCE|1|9|U|20
3JCE|1|9|A|21
3JCE|1|9|G|22

Current chains

Chain 9

tRNA

Nearby chains

Chain 5

50S ribosomal protein L1

Chain A

Large subunit ribosomal RNA; LSU rRNA