HL_3JCE_022

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

3JCE|1|A|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCE_022 not in the Motif Atlas

Homologous match to HL_4WF9_014

Geometric discrepancy: 0.1402

The information below is about HL_4WF9_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

3JCE|1|A|G|410
3JCE|1|A|G|411
3JCE|1|A|A|412
3JCE|1|A|C|413
3JCE|1|A|C|414
3JCE|1|A|A|415
3JCE|1|A|U|416
3JCE|1|A|C|417

Current chains

Chain A

23 ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15