HL_3JCE_024

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

3JCE|1|A|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCE_024 not in the Motif Atlas

Homologous match to HL_5J7L_148

Geometric discrepancy: 0.1209

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

3JCE|1|A|C|487
3JCE|1|A|G|488
3JCE|1|A|G|489
3JCE|1|A|C|490
3JCE|1|A|G|491
3JCE|1|A|A|492
3JCE|1|A|G|493

Current chains

Chain A

23 ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L22