HL_3JCE_063

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

3JCE|1|A|A|2268, 3JCE|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCE_063 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.1004

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

3JCE|1|A|C|2264
3JCE|1|A|U|2265
3JCE|1|A|A|2266
3JCE|1|A|A|2267
3JCE|1|A|A|2268
3JCE|1|A|G|2269
3JCE|1|A|A|2270
3JCE|1|A|G|2271
3JCE|1|A|U|2272
3JCE|1|A|A|2273
3JCE|1|A|A|2274
3JCE|1|A|C|2275
3JCE|1|A|G|2276

Current chains

Chain A

23 ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27