HL_3JCE_064

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCE_064 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.2009

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

3JCE|1|A|G|2303
3JCE|1|A|G|2304
3JCE|1|A|U|2305
3JCE|1|A|C|2306
3JCE|1|A|G|2307
3JCE|1|A|G|2308
3JCE|1|A|A|2309
3JCE|1|A|C|2310
3JCE|1|A|A|2311
3JCE|1|A|U|2312
3JCE|1|A|C|2313

Current chains

Chain A

23 ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L5