HL_3JCE_071

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCE_071 not in the Motif Atlas

Homologous match to HL_4WF9_058

Geometric discrepancy: 0.2073

The information below is about HL_4WF9_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

3JCE|1|A|C|2551
3JCE|1|A|U|2552
3JCE|1|A|G|2553
3JCE|1|A|U|2554
3JCE|1|A|U|2555
3JCE|1|A|C|2556
3JCE|1|A|G|2557

Current chains

Chain A

23 ribosomal RNA

Nearby chains

Chain 6

Transfer RNA; tRNA

Chain x

Elongation factor 4