HL_3JCE_075

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

3JCE|1|A|G|2751, 3JCE|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCE_075 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0977

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

3JCE|1|A|C|2745
3JCE|1|A|U|2746
3JCE|1|A|G|2747
3JCE|1|A|A|2748
3JCE|1|A|A|2749
3JCE|1|A|A|2750
3JCE|1|A|G|2751
3JCE|1|A|C|2752
3JCE|1|A|A|2753
3JCE|1|A|U|2754
3JCE|1|A|C|2755
3JCE|1|A|U|2756
3JCE|1|A|A|2757
3JCE|1|A|A|2758
3JCE|1|A|G|2759

Current chains

Chain A

23 ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13