HL_3JCE_115

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

3JCE|1|A|A|311

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCE_115 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1721

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

3JCE|1|A|C|305
3JCE|1|A|U|306
3JCE|1|A|G|307
3JCE|1|A|G|308
3JCE|1|A|A|309
3JCE|1|A|A|310
3JCE|1|A|A|311
3JCE|1|A|G|312

Current chains

Chain A

23 ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L24