HL_3JCJ_008

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

3JCJ|1|A|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCJ_008 not in the Motif Atlas

Geometric match to HL_4WF9_006

Geometric discrepancy: 0.1389

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

3JCJ|1|A|G|194
3JCJ|1|A|A|195
3JCJ|1|A|A|196
3JCJ|1|A|A|197
3JCJ|1|A|C|198
3JCJ|1|A|A|199
3JCJ|1|A|U|200
3JCJ|1|A|C|201

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L15

Chain W

50S ribosomal protein L28