HL_3JCJ_028

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUGCUAACGU

Length

10 nucleotides

Bulged bases

3JCJ|1|A|U|958, 3JCJ|1|A|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCJ_028 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2648

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

3JCJ|1|A|G|954
3JCJ|1|A|U|955
3JCJ|1|A|G|956
3JCJ|1|A|C|957
3JCJ|1|A|U|958
3JCJ|1|A|A|959
3JCJ|1|A|A|960
3JCJ|1|A|C|961
3JCJ|1|A|G|962
3JCJ|1|A|U|963

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L16