HL_3JCJ_029

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

3JCJ|1|A|A|983, 3JCJ|1|A|A|984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCJ_029 not in the Motif Atlas

Homologous match to HL_7A0S_027

Geometric discrepancy: 0.2573

The information below is about HL_7A0S_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3JCJ|1|A|G|978
3JCJ|1|A|A|979
3JCJ|1|A|A|980
3JCJ|1|A|A|981
3JCJ|1|A|C|982
3JCJ|1|A|A|983
3JCJ|1|A|A|984
3JCJ|1|A|C|985

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L20

Chain Q

50S ribosomal protein L21

Chain Y

50S ribosomal protein L30