HL_3JCJ_044

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

3JCJ|1|A|U|1693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCJ_044 not in the Motif Atlas

Geometric match to HL_4PMI_004

Geometric discrepancy: 0.1087

The information below is about HL_4PMI_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

3JCJ|1|A|C|1691
3JCJ|1|A|U|1692
3JCJ|1|A|U|1693
3JCJ|1|A|C|1694
3JCJ|1|A|G|1695
3JCJ|1|A|G|1696

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain g

Small subunit ribosomal RNA; SSU rRNA