HL_3JCJ_051

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

3JCJ|1|A|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCJ_051 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.1264

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

3JCJ|1|A|G|1949
3JCJ|1|A|G|1950
3JCJ|1|A|U|1951
3JCJ|1|A|A|1952
3JCJ|1|A|A|1953
3JCJ|1|A|G|1954
3JCJ|1|A|U|1955
3JCJ|1|A|U|1956
3JCJ|1|A|C|1957

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L14

Chain g

Small subunit ribosomal RNA; SSU rRNA